Preface
1 Introducti
N_2 Pairwise alignment
3 Markov chains and hidden Markov models
4 Pairwise alignment using HMMs
5 Profile HMMs for sequence families
6 Multiple sequence alignment methods
7 Building phylogenetic trees
8 Probabilistic approaches to Phylogeny
9 Transformational grammars
10 RNA structure analysis
11 Background on probability
Bibliography
Author index
Subject index